PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g086430.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 182aa    MW: 20469.2 Da    PI: 9.492
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g086430.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH49.66.2e-16106130226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ktelC+ +++tGtC+yG++C+FaHg
  Solyc02g086430.2.1 106 KTELCNKWQETGTCPYGENCQFAHG 130
                         9***********************8 PP

2zf-CCCH20.68e-07143168126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykte Cr  +++  C+yG rC+F H+
  Solyc02g086430.2.1 143 YKTEVCRMVLAGDMCPYGHRCHFRHS 168
                         9**********55**********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.9E-19100137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-11101136IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.117104132IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-13106130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-12138171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-9138171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.188142170IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5142169IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGVNRDTQIS DPRPPNIRQG SVVEPNRPER RNTERVSLPK SISVRSSGYL KLKAQGGNTG  60
GPSQAKARQK STVPPLTESQ QRVYVPGSKK EEEALEFDVY NQGMLKTELC NKWQETGTCP  120
YGENCQFAHG ITELRPVIRH PRYKTEVCRM VLAGDMCPYG HRCHFRHSLT EEERRTGPGL  180
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-23106171570Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153541e-174Solanum lycopersicum chromosome 2 clone C02HBa0011O23, complete sequence
GenBankAC2154111e-174Solanum lycopersicum chromosome 2 clone C02HBa0180C05, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233706.11e-135PREDICTED: zinc finger CCCH domain-containing protein 14
RefseqXP_015065053.11e-135PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ9C9N33e-62C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLK4BBF11e-134K4BBF1_SOLLC; Uncharacterized protein
TrEMBLM1D0E81e-133M1D0E8_SOLTU; Uncharacterized protein
STRINGSolyc02g086430.2.11e-133(Solanum lycopersicum)
STRINGPGSC0003DMT4000785831e-132(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-60C3H family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]